Help for CellProfiler Modules Data Tools CalculateMath CalculateStatistics DisplayDataOnImage DisplayDensityPlot DisplayHistogram DisplayPlatemap DisplayScatterPlot ExportToDatabase ExportToSpreadsheet FlagImage MergeOutputFiles File Processing CreateBatchFiles ExportToDatabase ExportToSpreadsheet Groups Images LoadData LoadImages LoadSingleImage Metadata NamesAndTypes RenameOrRenumberFiles SaveImages Image Processing Align ApplyThreshold ClassifyPixels ColorToGray CorrectIlluminationApply CorrectIlluminationCalculate Crop EnhanceEdges EnhanceOrSuppressFeatures FlipAndRotate GrayToColor ImageMath InvertForPrinting MakeProjection Load Modules Setting the Default Input Folder Setting the Default Output Folder Setting the Output Filename Other Features Batch Processing Running Multiple Pipelines Configuring Logging Plate Viewer Table of contents Using CellProfiler Why Use CellProfiler? Navigating The Menu Bar Using the File Menu Using the Edit Menu Using the Test Menu Using the Window Menu Using the Parameter Sampling Menu Using the Data Tools Menu Using Module Display Windows Using The Display Window Menu Bar Using The Interactive Navigation Toolbar How To Use The Image Tools Creating A Project Introduction to Projects Selecting Images for Input Configuring Images for Analysis Loading Image Stacks and Movies How To Build A Pipeline Testing Your Pipeline Running Your Pipeline Using Your Output How Measurements are Named Using Spreadsheets and Databases Using the Output File Troubleshooting Memory and Speed Issues Legacy Modules and Features The most recent manual is available here. This manual accompanies version T18:30:32 0c7fb94 of CellProfiler. These steps will help us to maintain funding for the project and continue to improve and support it. Post the reference for your publication on the CellProfiler forum so that we are aware of it. ![]() Sabatini and Polina Golland atĬellProfiler is free and open-source! If you find it useful, please credit CellProfiler in publications 1. CellProfiler cell image analysis software Created by Anne E.
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